PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00110291001
Common NameGSBRNA2T00110291001, LOC106395845
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 218aa    MW: 24080.7 Da    PI: 6.8224
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00110291001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.8e-3871071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkCa++Cv+apyf+++q +++fa++hk+FGasn +k+l++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +
  GSBRNA2T00110291001   7 PCGACKFLRRKCANGCVFAPYFCHDQgASHFAAIHKVFGASNASKILSNLPISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVN 96 
                          7*************************89************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+l+ lk++
  GSBRNA2T00110291001  97 LQAQLEILKQQ 107
                          *******9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0546108IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSSSGSPCGA CKFLRRKCAN GCVFAPYFCH DQGASHFAAI HKVFGASNAS KILSNLPISD  60
RCEAAITISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LEILKQQAAQ SIMFADSPSS  120
VNPNSYYGDN TKTSYHHDHH HEHRNIHHHD ETRLVYQTGS SWMVQHGDAT VNSYPTGNCS  180
GFGEVSIYPD LEQHLNSFNQ DHLKELQSAN FGYISFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00110291001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738490.0AB473849.1 Arabidopsis thaliana ASL16 mRNA for ASYMMETRIC LEAVES2-like 16 protein, complete cds.
GenBankAF4478930.0AF447893.1 Arabidopsis thaliana LOB DOMAIN 29 (LBD29) mRNA, complete cds.
GenBankBT0252820.0BT025282.1 Arabidopsis thaliana At3g58190 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691642.11e-163PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9M2J71e-129LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A078EHG71e-163A0A078EHG7_BRANA; BnaC04g23780D protein
STRINGBra014581.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-112lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]